Tag : RNASeq

AI/ML

Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data.

Newsemia
Related Articles Identifying inaccuracies in gene expression estimates from unstranded RNA-seq data. Sci Rep. 2019 11 08;9(1):16342 Authors: Pomaznoy M, Sethi A, Greenbaum J, Peters...
AI/ML

Model-Based Autoencoders for Imputing Discrete single-cell RNA-seq Data.

Newsemia
Related Articles Model-Based Autoencoders for Imputing Discrete single-cell RNA-seq Data. Methods. 2020 Sep 21;: Authors: Tian T, Min MR, Wei Z Abstract Deep neural networks...
AI/ML

Metabolomic analysis of fibrotic mice combined with public RNA-seq human lung data reveal potential diagnostic biomarker candidates for lung fibrosis.

Newsemia
Related Articles Metabolomic analysis of fibrotic mice combined with public RNA-seq human lung data reveal potential diagnostic biomarker candidates for lung fibrosis. FEBS Open Bio....
AI/ML

A deep learning model to predict RNA-Seq expression of tumours from whole slide images.

Newsemia
Related Articles A deep learning model to predict RNA-Seq expression of tumours from whole slide images. Nat Commun. 2020 08 03;11(1):3877 Authors: Schmauch B, Romagnoni...
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EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data

Newsemia
Teschendorff, AE; Zhu, T; Breeze, CE; Beck, S; (2020) EPISCORE: cell type deconvolution of bulk tissue DNA methylomes from single-cell RNA-Seq data. Genome Biology ,...
Cardiology

Single-Cell RNA-Seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells.

Newsemia
Related Articles Single-Cell RNA-Seq of the Developing Cardiac Outflow Tract Reveals Convergent Development of the Vascular Smooth Muscle Cells. Cell Rep. 2019 07 30;28(5):1346-1361.e4 Authors:...
AI/ML

A practical application of generative adversarial networks for RNA-seq analysis to predict the molecular progress of Alzheimer's disease.

Newsemia
Related Articles A practical application of generative adversarial networks for RNA-seq analysis to predict the molecular progress of Alzheimer’s disease. PLoS Comput Biol. 2020 Jul...
Latest News

RNA-Seq Analysis of an Antisense Sequence Optimized for Exon Skipping in Duchenne Patients Reveals No Off-Target Effect

Newsemia
Domenger, C; Allais, M; François, V; Léger, A; Lecomte, E; Montus, M; Servais, L; … Le Guiner, C; + view all Domenger, C; Allais, M;...
Biology

Malpighian tubules of caterpillars: blending RNAseq and physiology to reveal regional functional diversity and novel epithelial ion transport control mechanisms [RESEARCH ARTICLE]

Newsemia
Dennis Kolosov and Michael J. O’Donnell The Malpighian tubules (MTs) and hindgut constitute the functional kidney of insects. MTs are outpouchings of the gut and...
Biology

Recurrent functional misinterpretation of RNA-seq data caused by sample-specific gene length bias

Newsemia
by Shir Mandelboum, Zohar Manber, Orna Elroy-Stein, Ran Elkon Data normalization is a critical step in RNA sequencing (RNA-seq) analysis, aiming to remove systematic effects...
Biology

Malpighian tubules of caterpillars: blending RNAseq and physiology to reveal regional functional diversity and novel epithelial ion transport control mechanisms [RESEARCH ARTICLE]

Newsemia
Dennis Kolosov and Michael J. O’Donnell Malpighian tubules (MTs) and hindgut constitute the functional kidney of insects. MTs are outpouches of the gut and in...
Biology

Malpighian tubules of caterpillars: blending RNAseq and physiology to reveal regional functional diversity and novel epithelial ion transport control mechanisms [RESEARCH ARTICLE]

Newsemia
Dennis Kolosov and Michael J. O’Donnell Malpighian tubules (MTs) and hindgut constitute the functional kidney of insects. MTs are outpouches of the gut and in...
Biology

Dissecting the transcriptome landscape of the human fetal neural retina and retinal pigment epithelium by single-cell RNA-seq analysis

Newsemia
by Yuqiong Hu, Xiaoye Wang, Boqiang Hu, Yunuo Mao, Yidong Chen, Liying Yan, Jun Yong, Ji Dong, Yuan Wei, Wei Wang, Lu Wen, Jie Qiao,...
AI/ML

Deep-learning augmented RNA-seq analysis of transcript splicing.

Newsemia
Related Articles Deep-learning augmented RNA-seq analysis of transcript splicing. Nat Methods. 2019 04;16(4):307-310 Authors: Zhang Z, Pan Z, Ying Y, Xie Z, Adhikari S, Phillips...

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