Tag : Phylogenetics

Biology

BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics

Newsemia
Abstract BEAGLE is a high-performance likelihood-calculation library for phylogenetic inference. The BEAGLE library defines a simple, but flexible, application programming interface (API), and includes a...
Biology

Diversification of the type IV filament superfamily into machines for adhesion, protein secretion, DNA uptake, and motility

Newsemia
by Rémi Denise, Sophie S. Abby, Eduardo P. C. Rocha Processes of molecular innovation require tinkering and shifting in the function of existing genes. How...
Biology

Evolution of protein kinase substrate recognition at the active site

Newsemia
by David Bradley, Pedro Beltrao Protein kinases catalyse the phosphorylation of target proteins, controlling most cellular processes. The specificity of serine/threonine kinases is partly determined...
Biology

Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts

Newsemia
by Jacob L. Steenwyk, Dana A. Opulente, Jacek Kominek, Xing-Xing Shen, Xiaofan Zhou, Abigail L. Labella, Noah P. Bradley, Brandt F. Eichman, Neža Čadež, Diego...
Biology

Secondary contact between diverged host lineages entails ecological speciation in a European hantavirus

Newsemia
by Moritz Saxenhofer, Sabrina Schmidt, Rainer G. Ulrich, Gerald Heckel The diversity of viruses probably exceeds biodiversity of eukaryotes, but little is known about the...
Biology

EukRef: Phylogenetic curation of ribosomal RNA to enhance understanding of eukaryotic diversity and distribution

Newsemia
by Javier del Campo, Martin Kolisko, Vittorio Boscaro, Luciana F. Santoferrara, Serafim Nenarokov, Ramon Massana, Laure Guillou, Alastair Simpson, Cedric Berney, Colomban de Vargas, Matthew...
Biology

<i>Plasmodium vivax</i>-like genome sequences shed new insights into <i>Plasmodium vivax</i> biology and evolution

Newsemia
by Aude Gilabert, Thomas D. Otto, Gavin G. Rutledge, Blaise Franzon, Benjamin Ollomo, Céline Arnathau, Patrick Durand, Nancy D. Moukodoum, Alain-Prince Okouga, Barthélémy Ngoubangoye, Boris...

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